Workshop Registration End Date :2024-08-08

Virtual Workshop

Prediction of Peptide’s Secondary, Tertiary Structure and Their Properties Using Online Tools

Protein Structures: From Sequence to 3D Models

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Virtual (Google Meet)
Mentor Based
3 Days (1.5 Hours/Day)
Start Date
08 – Aug – 24
08:00 PM onwards IST


Proteins are an important class of biological macromolecules present in all biological organisms. All proteins are polymers of 20 different amino acids. Proteins fold into one, or more, specific spatial conformations to perform its biological function, driven by a number of noncovalent interactions. In order to understand the functions of proteins at a molecular level, it is necessary to determine its 3D structure. Thus, protein sequence (primary and secondary) and protein secondary structure prediction is an important part of analysis in proteomics. This will lead to predict and analyze the 3D structure (Molecular Modeling and Structure Prediction) of a protein.


The aim is to predict the characterization, post translational site, topology, secondary and tertiary structure of a given protein sequence.

Workshop Objectives

  • To generate the physiochemical properties, solubility and antigenicity of a protein sequence.
  • To predict the secondary and tertiary structure of peptide.

Workshop Structure

Day 1: Characterization of peptide

  • Physiochemical properties generation using Expasy ProtParam online server
  • Solubility and Antigenicity Prediction using SolPro and Vaxijen v2.0 Online Server Online tool

Day 2: Secondary and Tertiary Structure Prediction

  • Alpha helices, beta sheets, turn and coil using Gor IV online server
  • Tertiary structure prediction using PEP-FOLD3 online server

Day 3: Transmembrane Helices Prediction and Structure visualization

  • Generation of the number of transmembrane helices using TMHMM Server v. 2.0
  • 3D Structure Visualization of peptide using Visualization tool

Participant’s Eligibility

  • Undergraduate degree in Biotechnology, Biochemistry, or related fields.
  • Professionals in the pharmaceutical or biotech industries.
  • Individuals with a keen interest in structural biology and proteomics.

Important Dates

Registration Ends

Indian Standard Timing 07:00 PM

Workshop Dates

2024-08-08 to 2024-08-10
Indian Standard Timing 08:00 PM onwards

Workshop Outcomes

  • Enhanced understanding of peptide physiochemical properties and solubility.
  • Ability to predict secondary and tertiary structures of peptides.
  • Proficiency in using online tools for structural predictions.
  • Skills in visualizing and analyzing 3D peptide structures.
  • Practical knowledge applicable to bioinformatics and structural biology research.

Mentor Profile

Name: Dr. Md Afroz Alam
Designation: Professor and Head
Affiliation: Department of Bioinformatics, Shalom New Life College, Bengaluru, Karnataka

Dr. Md Afroz Alam is a Professor and Head in the Department of Bioinformatics, at Shalom New Life College, Bengaluru, Karnataka. He received his Ph.D. Degree in Bioinformatics from Jaypee University of Information Technology, Solan, Himachal Pradesh in 2009. Then he has worked as Assistant Professor, Head and Program Coordinator in the Department of Bioinformatics at Karunya Institute of Technology and Sciences (Deemed University) for 11 Years. He is having 14 years of teaching and research experience in the field of Bioinformatics. His area of expertise includes: Computer Aided Drug Design, Molecular Modeling and Simulation, QSAR and Pharmacophore modeling, Biostatistics, R programming, Unix and Linux. He is the author of 24 research articles, 2 Book Chapter, recipient of short-term research grants, workshop grants, and National Youth leader award by Ministry of Youth Affairs and Sports under the National Service Scheme, Government of India.

Fee Structure


INR. 1399
USD. 50

Ph.D. Scholar / Researcher

INR. 1699
USD. 55

Academician / Faculty

INR. 2199
USD. 60

Industry Professional

INR. 2699
USD. 85

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  • Access to Live Lectures
  • Access to Recorded Sessions
  • e-Certificate
  • Query Solving Post Workshop

Future Career Prospects

  • Structural Biologist
  • Bioinformatics Specialist
  • Proteomics Researcher
  • Biotech Analyst
  • Molecular Modeler
  • Pharmaceutical Scientist

Job Opportunities

  • Research and development roles in biotech and pharmaceutical companies.
  • Academic positions in universities and research institutes.
  • Bioinformatics roles in healthcare and biotech firms.
  • Positions in proteomics and structural biology laboratories.

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