Protein-Protein Interaction (PPI) Networks and Biomarker Identification

Unlock the secrets of proteins and biomarkers through cutting-edge bioinformatics tools.

Mode: Virtual / Online
Type: Mentor Based
Level:
Duration: 3 Days (1.5 Hours Per Day)
Starts: 26 April 2026
Time: 8:00 PM IST

About This Course

Over the course of three days, participants will engage in practical sessions focused on identifying hub proteins in PPI networks, understanding gene ontology, and performing pathway enrichment analysis. The workshop also includes a deep dive into transcription factor (TF) identification and how these factors influence disease-related biomarkers. This session will equip participants with the knowledge needed to navigate the complex landscape of biomarker discovery and systems biology.

Aim

The workshop on “Protein-Protein Interaction (PPI) Networks and Biomarker Identification” aims to provide participants with a comprehensive understanding of PPI networks and their role in biomarker discovery. Participants will learn to use cutting-edge tools like Cytoscape and STRING database to analyze PPI networks, identify key biomarkers, and explore gene ontology and pathway analysis techniques. The workshop focuses on practical, hands-on training to enhance participants’ ability to analyze biological networks and identify critical biomarkers for healthcare applications.

Workshop Objectives

Understand the basics of Protein-Protein Interaction (PPI) networks and their importance in biological research.
Learn to use STRING database and Cytoscape for PPI network construction and visualization.
Discover biomarker identification techniques through the analysis of hub proteins and network centrality.
Conduct gene ontology and pathway enrichment analysis using cutting-edge bioinformatics tools.
Explore the role of transcription factors (TFs) and miRNA-gene interactions in PPI networks.

Workshop Structure

Day 1: Introduction to PPI Networks and STRING Database

Basics of systems biology and network biology.
PPI network search using STRING and visualizing networks in Cytoscape.
Hands-on: Search and analyze PPI networks in Cytoscape, focusing on degree centrality.

Day 2: Biomarker Identification Using Cytoscape and CytoHubba

Identifying biomarkers through hub proteins in PPI networks.
Using Cytoscape and CytoHubba for biomarker discovery.
Hands-on: NetworkAnalyzer and CytoHubba to identify key biomarkers.

Day 3: Gene Ontology, Pathway Identification, and TF Identification

Gene Ontology (GO) and pathway enrichment analysis.
Identifying transcription factors (TFs) and miRNA-gene interactions using Gen-TF.
Hands-on: Perform GO enrichment analysis, explore pathways, and identify relevant TFs.

Important Dates

Registration Ends

April 26, 2026
IST 7:00 PM

Workshop Dates

April 26, 2026 – April 28, 2026
IST 8:00 PM

Workshop Outcomes

Hands-on experience with Cytoscape and STRING database for constructing PPI networks.
Practical understanding of how to identify biomarkers using PPI network analysis.
Ability to conduct gene ontology and pathway enrichment analysis to identify key biological processes.
Knowledge of transcription factor and miRNA-gene interaction analysis.
Proficiency in interpreting and visualizing complex biological networks to uncover new insights.

Fee Structure

Student Fee

₹2499 | $65

Ph.D. Scholar / Researcher Fee

₹3499 | $75

Academician / Faculty Fee

₹4499 | $85

Industry Professional Fee

₹5499 | $95

What You’ll Gain

Live & recorded sessions
e-Certificate upon completion
Post-workshop query support
Hands-on learning experience

Need Help?

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(+91) 120-4781-217

★★★★★

Cancer Drug Discovery: Creating Cancer Therapies

Undoubtedly, the professor's expertise was evident, and their ability to cover a vast amount of material within the given timeframe was impressive. However, the pace at which the content was presented made it challenging for some attendees, including myself, to fully grasp and absorb the information.

Mario Rigo • November 30, 2023 at 5:18 pm