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Points to Ponder

Points to Ponder
A Hands-On Program for Genomic Data Analysis
Sequence Analysis and Alignment Techniques
Additional Resources
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A Hands-On Program for Genomic Data Analysis

Current Progress

Current Progress

Current Progress

Step 1

STEP 2

STEP 3

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Instructor

Akshay Kumar

For Subscribers Only

Foundations of Bioinformatics and Genomic Data

Introduction to Bioinformatics

Overview of Bioinformatics: History and Applications

Key Concepts: DNA, RNA, Proteins, and Their Roles in Bioinformatics

Introduction to Sequences: Genomic, Transcriptomic, and Proteomic Data

Databases and Genomic Resources

Overview of Genomic Databases: NCBI, Ensembl, UCSC

Types of Genomic Data: DNA, RNA, and Protein Databases

Introduction to Data Formats: FASTA, GenBank, GFF, VCF

Introduction to Bioinformatics Tools

Overview of Free Bioinformatics Tools and Software

Introduction to NCBI, UCSC Genome Browser, Galaxy, and MEGA X

How to Set Up and Use Tools for Accessing Genomic Data

Hands-On Session 1 – Accessing Genomic Data

Accessing the NCBI Database

Overview of Sequence Formats

Understanding Sequence Formats (FASTA, GenBank, and Others)

Basic Handling of Sequence Files: Opening, Saving, and Viewing Sequence Data

Additional Resources

Points to Ponder

Frequently Asked Questions (FAQs)

For Subscribers Only

Sequence Analysis and Alignment Techniques

Sequence alignment concepts: Pairwise and multiple sequence alignments.

Introduction to Sequence Alignment

Introduction to BLAST: Types of BLAST (Nucleotide, Protein, etc.)

Hands-On Session 2 – Sequence Analysis with BLAST

Performing Sequence Alignment Using NCBI BLAST

Phylogenetic Analysis

Basics of Phylogenetics: Understanding Evolutionary Relationships

Introduction to Phylogenetic Tree Construction

Hands-On Session 3– Phylogenetic Analysis with MEGA X

Constructing a Phylogenetic Tree Using MEGA X

Advanced Sequence Analysis Tools

Overview of Advanced Tools for Sequence Analysis

Activity: Comparing BLAST and Other Alignment Tools for Accuracy

Additional Resources

Points to Ponder

Frequently Asked Questions (FAQs)

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