Basics of Phylogenetics: Understanding Evolutionary Relationships

Apprentice
A Hands-On Program for Genomic Data Analysis
Sequence Analysis and Alignment Techniques
Phylogenetic Analysis
Basics of Phylogenetics: Understanding Evolutionary Relationships

A Hands-On Program for Genomic Data Analysis

Basics of Phylogenetics: Understanding Evolutionary Relationships

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Foundations of Bioinformatics and Genomic Data

Introduction to Bioinformatics

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Overview of Bioinformatics: History and Applications

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Key Concepts: DNA, RNA, Proteins, and Their Roles in Bioinformatics

For Subscribers Only

Introduction to Sequences: Genomic, Transcriptomic, and Proteomic Data

Databases and Genomic Resources

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Overview of Genomic Databases: NCBI, Ensembl, UCSC

For Subscribers Only

Types of Genomic Data: DNA, RNA, and Protein Databases

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Introduction to Data Formats: FASTA, GenBank, GFF, VCF

Introduction to Bioinformatics Tools

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Overview of Free Bioinformatics Tools and Software

For Subscribers Only

Introduction to NCBI, UCSC Genome Browser, Galaxy, and MEGA X

For Subscribers Only

How to Set Up and Use Tools for Accessing Genomic Data

Hands-On Session 1 – Accessing Genomic Data

For Subscribers Only

Accessing the NCBI Database

Overview of Sequence Formats

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Understanding Sequence Formats (FASTA, GenBank, and Others)

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Basic Handling of Sequence Files: Opening, Saving, and Viewing Sequence Data

Additional Resources

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Points to Ponder

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Nice to Know

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Frequently Asked Questions (FAQs)

For Subscribers Only

Glossary

Multiple Choice Questions (MCQs)

Sequence Analysis and Alignment Techniques

Sequence alignment concepts: Pairwise and multiple sequence alignments.

For Subscribers Only

Introduction to Sequence Alignment

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Introduction to BLAST: Types of BLAST (Nucleotide, Protein, etc.)

Hands-On Session 2 – Sequence Analysis with BLAST

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Performing Sequence Alignment Using NCBI BLAST

Phylogenetic Analysis

For Subscribers Only

Basics of Phylogenetics: Understanding Evolutionary Relationships

For Subscribers Only

Introduction to Phylogenetic Tree Construction

Hands-On Session 3– Phylogenetic Analysis with MEGA X

For Subscribers Only

Constructing a Phylogenetic Tree Using MEGA X

Advanced Sequence Analysis Tools

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Overview of Advanced Tools for Sequence Analysis

For Subscribers Only

Activity: Comparing BLAST and Other Alignment Tools for Accuracy

Additional Resources

For Subscribers Only

Points to Ponder

For Subscribers Only

Nice to Know

For Subscribers Only

Frequently Asked Questions (FAQs)

For Subscribers Only

Glossary

Multiple Choice Question (MCQs)